2FL8 | pdb_00002fl8

Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2FL8

This is version 1.6 of the entry. See complete history

Literature

Evolution of bacteriophage tails: structure of t4 gene product 10

Leiman, P.G.Shneider, M.M.Mesyanzhinov, V.V.Rossmann, M.G.

(2006) J Mol Biology 358: 912-921

  • DOI: https://doi.org/10.1016/j.jmb.2006.02.058
  • Primary Citation Related Structures: 
    2FKK, 2FL8, 2FL9

  • PubMed Abstract: 

    The success of tailed bacteriophages to infect cells far exceeds that of most other viruses on account of their specialized tail and associated baseplate structures. The baseplate protein gene product (gp) 10 of bacteriophage T4, whose structure was determined to 1.2 A resolution, was fitted into the cryo-electron microscopy structures of the pre and post-infection conformations of the virus. gp10 functions as a molecular lever that rotates and extends the hinged short tail fibers to facilitate cell attachment. The central folding motif of the gp10 trimer is similar to that of the baseplate protein gp11 and to the receptor-binding domain of the short tail fiber, gp12. The three proteins comprise the periphery of the baseplate and interact with each other. The structural and functional similarities of gp10, gp11, and gp12 and their sequential order in the T4 genome suggest that they evolved separately, subsequent to gene triplication from a common ancestor. Such events are usual in the evolution of complex organelles from a common primordial molecule.


  • Organizational Affiliation
    • Department of Biological Sciences, Purdue University, 915 W. State Street, West Lafayette, IN 47907-2054, USA.

Macromolecule Content 

  • Total Structure Weight: 1,194.66 kDa 
  • Atom Count: 6,192 
  • Modeled Residue Count: 6,192 
  • Deposited Residue Count: 10,836 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Baseplate structural protein Gp10
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
602Tequatrovirus T4Mutation(s): 2 
Gene Names: 10
UniProt
Find proteins for P10928 (Enterobacteria phage T4)
Explore P10928 
Go to UniProtKB:  P10928
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10928
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-04-04
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-07-18
    Changes: Data collection
  • Version 1.4: 2019-11-06
    Changes: Data collection, Other
  • Version 1.5: 2021-10-20
    Changes: Database references
  • Version 1.6: 2024-02-14
    Changes: Data collection, Refinement description