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Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FKK experimental model PDB 1S2E
Sample bacteriophage T4 baseplate
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 945 Reported Resolution (Å) 12 Resolution Method Other Details THE COORDINATES CONTAIN CA ONLY. RESIDUES 161-405 ARE MISSING. PLEASE SEE THE RELATED EMDB ENTRY FOR DETAILS OF THE EM RECONSTRUCTION. Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 (2FKK, 1S2E) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target correlation coefficient as defined by the program COLORES/SITUS Overall B Value Fitting Procedure Details METHOD--laplacian filtered real space REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment 2001-01-30 Temperature (Kelvin) Microscope Model FEI/PHILIPS CM300FEG/T Minimum Defocus (nm) 1200 Maximum Defocus (nm) 5000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 45000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING SITUS COLORES RECONSTRUCTION SPIDER