2Z5L | pdb_00002z5l

The first ketoreductase of the tylosin PKS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 
    0.287 (Depositor) 
  • R-Value Work: 
    0.259 (Depositor), 0.271 (DCC) 
  • R-Value Observed: 
    0.259 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2Z5L

This is version 1.3 of the entry. See complete history

Literature

A tylosin ketoreductase reveals how chirality is determined in polyketides

Keatinge-Clay, A.T.

(2007) Chem Biol 14: 898-908

  • DOI: https://doi.org/10.1016/j.chembiol.2007.07.009
  • Primary Citation Related Structures: 
    2Z5L

  • PubMed Abstract: 

    Because it controls the majority of polyketide stereocenters, the ketoreductase (KR) is a central target in engineering polyketide synthases (PKSs). To elucidate the mechanisms of stereocontrol, the structure of KR from the first module of the tylosin PKS was determined. A comparison with a recently solved erythromycin KR that operates on the same substrate explains why their products have opposite alpha-substituent chiralities. The structure reveals how polyketides are guided into the active site by key residues in different KR types. There are four types of reductase-competent KRs, each capable of fixing a unique combination of alpha-substituent and beta-hydroxyl group chiralities, as well as two types of reductase-incompetent KRs that control alpha-substituent chirality alone. A protocol to assign how a module will enforce substituent chirality based on its sequence is presented.


  • Organizational Affiliation
    • Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA. adriankc@msg.ucsf.edu

Macromolecule Content 

  • Total Structure Weight: 53.31 kDa 
  • Atom Count: 3,406 
  • Modeled Residue Count: 453 
  • Deposited Residue Count: 511 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tylactone synthase starter module and modules 1 & 2511Streptomyces fradiaeMutation(s): 0 
Gene Names: tylG
EC: 1.1.1.100
UniProt
Find proteins for O33954 (Streptomyces fradiae)
Explore O33954 
Go to UniProtKB:  O33954
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO33954
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free:  0.287 (Depositor) 
  • R-Value Work:  0.259 (Depositor), 0.271 (DCC) 
  • R-Value Observed: 0.259 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.18α = 90
b = 49.81β = 109.2
c = 68.81γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
PHASERphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2014-11-12
    Changes: Structure summary
  • Version 1.3: 2023-11-01
    Changes: Data collection, Database references, Refinement description