2YSX | pdb_00002ysx

Solution structure of the human SHIP SH2 domain

PDB DOI: https://doi.org/10.2210/pdb2YSX/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-04 Released: 2008-04-08
Deposition Author(s): Kasai, T., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the human SHIP SH2 domain

Kasai, T., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.42 kDa
Atom Count: 940
Modeled Residue Count: 119
Deposited Residue Count: 119
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Signaling inositol polyphosphate phosphatase SHIP II	A	119	Homo sapiens	Mutation(s): 0 Gene Names: SHIP EC: 3.1.3.56 (UniProt), 3.1.3.86 (UniProt), 3.1.3.36 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q92835 (Homo sapiens) Explore Q92835 Go to UniProtKB: Q92835
PHAROS: Q92835 GTEx: ENSG00000168918
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92835
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-04-08

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-04-08
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.