2YS1

Solution structure of the PH domain of Dynamin-2 from human

• PDB DOI: https://doi.org/10.2210/pdb2YS1/pdb
• BMRB: 11088

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2007-04-03 Released: 2008-04-08 
• Deposition Author(s): Li, H., Sato, M., Tochio, N., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, target function 

Literature

Solution structure of the PH domain of Dynamin-2 from human

Li, H., Sato, M., Tochio, N., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 13.08 kDa 
• Atom Count: 919 
• Modelled Residue Count: 113 
• Deposited Residue Count: 113 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynamin-2	A	113	Homo sapiens	Mutation(s): 0  Gene Names: DNM2 EC: 3.6.5.5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P50570 (Homo sapiens) Explore P50570  Go to UniProtKB:  P50570
PHAROS:  P50570 GTEx:  ENSG00000079805

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-04-08 
Deposition Author(s): Li, H., Sato, M., Tochio, N., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2008-04-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection