2YMU | pdb_00002ymu

Structure of a highly repetitive propeller structure

PDB DOI: https://doi.org/10.2210/pdb2YMU/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Nostoc punctiforme
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2012-10-10 Released: 2012-10-17
Deposition Author(s): Zeth, K., Chaudhuri, I., Martin, J., Lupas, A.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free:
0.207 (Depositor), 0.207 (DCC)
R-Value Work:
0.174 (Depositor), 0.174 (DCC)
R-Value Observed:
0.175 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2YMU

This is version 1.2 of the entry. See complete history.

Literature

Structure of a Highly Repetitive Propeller Structure

Chaudhuri, I., Zeth, K.

To be published.

Macromolecule Content

Total Structure Weight: 122.64 kDa
Atom Count: 9,719
Modeled Residue Count: 1,154
Deposited Residue Count: 1,154
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
WD-40 REPEAT PROTEIN	A, B	577	Nostoc punctiforme	Mutation(s): 0
UniProt
Find proteins for B2J0I0 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102)) Explore B2J0I0 Go to UniProtKB: B2J0I0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B2J0I0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.207 (Depositor), 0.207 (DCC)
R-Value Work: 0.174 (Depositor), 0.174 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.47	α = 90
b = 107.73	β = 90
c = 136.26	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
SHARP	phasing
DM	phasing
BUCCANEER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-10-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-17
Type: Initial release
Version 1.1: 2014-01-22
Changes: Structure summary
Version 1.2: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.