Caspase-8 in Complex with Darpin-8.4
Schroeder, T., Barandun, J., Grutter, M.G.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Caspase-8 subunit p18 | 159 | Homo sapiens | Mutation(s): 0  Gene Names: CASP8, MCH5 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14790 (Homo sapiens) Explore Q14790  Go to UniProtKB:  Q14790 | |||||
PHAROS:  Q14790 GTEx:  ENSG00000064012  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q14790 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Caspase-8 | 104 | Homo sapiens | Mutation(s): 0  Gene Names: CASP8, MCH5 EC: 3.4.22.61 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14790 (Homo sapiens) Explore Q14790  Go to UniProtKB:  Q14790 | |||||
PHAROS:  Q14790 GTEx:  ENSG00000064012  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q14790 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DARPIN-8.4 | 169 | synthetic construct | Mutation(s): 0  | ![]() | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
AC-IETD-CHO | G [auth H] | 4 | synthetic construct | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-(2-oxoethyl)-L-isoleucyl-L-alpha-glutamyl-N-[(1R)-2-carboxy-1-formylethyl]-L-threoninamide | H [auth I] | 5 | N/A | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | I [auth A], K [auth B], L [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | J [auth B], M [auth C], N [auth E], O [auth F], P [auth F] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Entity ID: 5 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000301 Query on PRD_000301 | H [auth I] | N-(2-oxoethyl)-L-isoleucyl-L-alpha-glutamyl-N-[(1R)-2-carboxy-1-formylethyl]-L-threoninamide | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 61 | α = 90 |
b = 81.6 | β = 90 |
c = 163.2 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |