2Y0Q | pdb_00002y0q

The mechanisms of HAMP-mediated signaling in transmembrane receptors - the A291C mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.269 (Depositor), 0.291 (DCC) 
  • R-Value Work: 
    0.215 (Depositor), 0.242 (DCC) 
  • R-Value Observed: 
    0.218 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2Y0Q

This is version 1.2 of the entry. See complete history

Literature

The Mechanisms of Hamp-Mediated Signaling in Transmembrane Receptors.

Ferris, H.U.Dunin-Horkawicz, S.Mondejar, L.G.Hulko, M.Hantke, K.Martin, J.Schultz, J.E.Zeth, K.Lupas, A.N.Coles, M.

(2011) Structure 19: 378

  • DOI: https://doi.org/10.1016/j.str.2011.01.006
  • Primary Citation Related Structures: 
    2L7H, 2L7I, 2Y0Q, 2Y0T, 2Y20, 2Y21

  • PubMed Abstract: 

    HAMP domains mediate signal transduction in over 7500 enzyme-coupled receptors represented in all kingdoms of life. The HAMP domain of the putative archaeal receptor Af1503 has a parallel, dimeric, four-helical coiled coil structure, but with unusual core packing, related to canonical packing by concerted axial rotation of the helices. This has led to the gearbox model for signal transduction, whereby the alternate packing modes correspond to signaling states. Here we present structures of a series of Af1503 HAMP variants. We show that substitution of a conserved small side chain within the domain core (A291) for larger residues induces a gradual transition in packing mode, involving both changes in helix rotation and bundle shape, which are most prominent at the C-terminal, output end of the domain. These are correlated with activity and ligand response in vitro and in vivo by incorporating Af1503 HAMP into mycobacterial adenylyl cyclase assay systems.


  • Organizational Affiliation
    • Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, 72076 Tübingen, Germany.

Macromolecule Content 

  • Total Structure Weight: 24.16 kDa 
  • Atom Count: 1,715 
  • Modeled Residue Count: 203 
  • Deposited Residue Count: 216 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
UNCHARACTERIZED PROTEIN
A, B, C, D
54Archaeoglobus fulgidusMutation(s): 1 
EC: 2.7.13.3
UniProt
Find proteins for O28769 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16))
Explore O28769 
Go to UniProtKB:  O28769
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO28769
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.269 (Depositor), 0.291 (DCC) 
  • R-Value Work:  0.215 (Depositor), 0.242 (DCC) 
  • R-Value Observed: 0.218 (Depositor) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.19α = 90
b = 55.45β = 90
c = 158.86γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-03-30
    Type: Initial release
  • Version 1.1: 2011-11-16
    Changes: Database references, Version format compliance
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references, Other