2XTL | pdb_00002xtl

Structure of the major pilus backbone protein from Streptococcus Agalactiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.216 (Depositor), 0.282 (DCC) 
  • R-Value Work: 
    0.185 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history

Literature

Structure-Based Approach to Rationally Design a Chimeric Protein for an Effective Vaccine Against Group B Streptococcus Infections.

Nuccitelli, A.Cozzi, R.Gourlay, L.J.Donnarumma, D.Necchi, F.Norais, N.Telford, J.L.Rappuoli, R.Bolognesi, M.Maione, D.Grandi, G.Rinaudo, C.D.

(2011) Proc Natl Acad Sci U S A 108: 10278

  • DOI: https://doi.org/10.1073/pnas.1106590108
  • Primary Citation Related Structures: 
    2XTL

  • PubMed Abstract: 

    Structural vaccinology is an emerging strategy for the rational design of vaccine candidates. We successfully applied structural vaccinology to design a fully synthetic protein with multivalent protection activity. In Group B Streptococcus, cell-surface pili have aroused great interest because of their direct roles in virulence and importance as protective antigens. The backbone subunit of type 2a pilus (BP-2a) is present in six immunogenically different but structurally similar variants. We determined the 3D structure of one of the variants, and experimentally demonstrated that protective antibodies specifically recognize one of the four domains that comprise the protein. We therefore constructed a synthetic protein constituted by the protective domain of each one of the six variants and showed that the chimeric protein protects mice against the challenge with all of the type 2a pilus-carrying strains. This work demonstrates the power of structural vaccinology and will facilitate the development of an optimized, broadly protective pilus-based vaccine against Group B Streptococcus by combining the uniquely generated chimeric protein with protective pilin subunits from two other previously identified pilus types. In addition, this work describes a template procedure that can be followed to develop vaccines against other bacterial pathogens.


  • Organizational Affiliation
    • Novartis Vaccines and Diagnostics, 53100 Siena, Italy.

Macromolecule Content 

  • Total Structure Weight: 98.94 kDa 
  • Atom Count: 7,974 
  • Modeled Residue Count: 901 
  • Deposited Residue Count: 904 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CELL WALL SURFACE ANCHOR FAMILY PROTEIN
A, B
452Streptococcus agalactiae 515Mutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.216 (Depositor), 0.282 (DCC) 
  • R-Value Work:  0.185 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.863α = 90
b = 104.681β = 90
c = 159.25γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-07-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2019-10-30
    Changes: Advisory, Data collection, Derived calculations, Other
  • Version 1.3: 2023-12-20
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.4: 2024-06-05
    Changes: Advisory, Derived calculations, Refinement description
  • Version 1.5: 2024-10-23
    Changes: Structure summary