2XIV | pdb_00002xiv

Structure of Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb2XIV/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-07-01 Released: 2010-07-14
Deposition Author(s): Pogenberg, V., Tizzano, B., Wilmanns, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.173 (Depositor), 0.186 (DCC)
R-Value Work:
0.149 (Depositor), 0.163 (DCC)
R-Value Observed:
0.150 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Structure of Rv1477, Hypothetical Invasion Protein of Mycobacterium Tuberculosis

Tizzano, B., Pogenberg, V., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 22.42 kDa
Atom Count: 1,902
Modeled Residue Count: 208
Deposited Residue Count: 209
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL INVASION PROTEIN	A	209	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 EC: 3.4
UniProt
Find proteins for O53168 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore O53168 Go to UniProtKB: O53168
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O53168
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.173 (Depositor), 0.186 (DCC)
R-Value Work: 0.149 (Depositor), 0.163 (DCC)
R-Value Observed: 0.150 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.496	α = 90
b = 65.542	β = 90
c = 67.773	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
Auto-Rickshaw	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-07-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-07-14
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations
Version 1.4: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Other, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.