2WE7 | pdb_00002we7

Crystal structure of Mycobacterium tuberculosis Rv0376c homologue from Mycobacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb2WE7/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycolicibacterium smegmatis MC2 155
Mutation(s): No

Deposited: 2009-03-29 Released: 2010-04-07
Deposition Author(s): Cho, H.J., Kang, B.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.252 (Depositor), 0.260 (DCC)
R-Value Work:
0.195 (Depositor), 0.207 (DCC)
R-Value Observed:
0.198 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Mycobacterium Tuberculosis Rv0376C Homologue from Mycobacterium Smegmatis

Cho, H.J., Kang, B.S.

To be published.

Macromolecule Content

Total Structure Weight: 81.56 kDa
Atom Count: 5,046
Modeled Residue Count: 678
Deposited Residue Count: 772
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Xanthine dehydrogenase	A, B	386	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0
UniProt
Find proteins for A0QQG1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QQG1 Go to UniProtKB: A0QQG1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0QQG1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.252 (Depositor), 0.260 (DCC)
R-Value Work: 0.195 (Depositor), 0.207 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 6₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.039	α = 90
b = 101.039	β = 90
c = 316.574	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
HKL-2000	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-04-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-04-07
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Other, Source and taxonomy, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.