2WB0 | pdb_00002wb0

2.1 resolution structure of the C-terminal domain of the human adenovirus 5 ssDNA binding protein

PDB DOI: https://doi.org/10.2210/pdb2WB0/pdb
Entry: 2WB0 supersedes: 1ADT

Classification: DNA BINDING PROTEIN
Organism(s): Human adenovirus 5
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2009-02-19 Released: 2010-03-31
Deposition Author(s): Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.245 (Depositor), 0.229 (DCC)
R-Value Work:
0.184 (Depositor)
R-Value Observed:
0.187 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2WB0

This is version 1.4 of the entry. See complete history.

Literature

High Resolution Structures of the Adenovirus Single-Stranded DNA Binding Protein and the N512P Hinge-Region Mutant

Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

To be published.

Macromolecule Content

Total Structure Weight: 40.03 kDa
Atom Count: 2,862
Modeled Residue Count: 314
Deposited Residue Count: 356
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E2A DNA-BINDING PROTEIN	A [auth X]	356	Human adenovirus 5	Mutation(s): 0
UniProt
Find proteins for P03265 (Human adenovirus C serotype 5) Explore P03265 Go to UniProtKB: P03265
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03265
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth X] SDF format, chain B [auth X] MOL2 format, chain C [auth X] MOL2 format, chain B [auth X] mmCIF format, chain C [auth X] mmCIF format, chain B [auth X]	B [auth X], C [auth X]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth X] Focus chain C [auth X] Interactions & Density Focus chain B [auth X] Focus chain C [auth X]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.245 (Depositor), 0.229 (DCC)
R-Value Work: 0.184 (Depositor)
R-Value Observed: 0.187 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.29	α = 90
b = 76.66	β = 90
c = 64.69	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-03-31

Deposition Author(s):

Kanellopoulos, P.N.

This entry supersedes: 1ADT

Revision History (Full details and data files)

Version 1.0: 2010-03-31
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2019-07-24
Changes: Data collection
Version 1.4: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.