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 2W81 | pdb_00002w81

Structure of a complex between Neisseria meningitidis factor H binding protein and CCPs 6-7 of human complement factor H


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 
    0.283 (Depositor), 0.299 (DCC) 
  • R-Value Work: 
    0.274 (Depositor), 0.289 (DCC) 
  • R-Value Observed: 
    0.275 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2W81

This is version 1.4 of the entry. See complete history. 

Literature

Neisseria Meningitidis Recruits Factor H Using Protein Mimicry of Host Carbohydrates.

Schneider, M.C., Prosser, B.E., Caesar, J.J.E., Kugelberg, E., Li, S., Zhang, Q., Quoraishi, S., Lovett, J.E., Deane, J.E., Sim, R.B., Roversi, P., Johnson, S., Tang, C.M., Lea, S.M.

(2009) Nature 458: 890

  • DOI: https://doi.org/10.1038/nature07769
  • Primary Citation Related Structures: 
    2W80, 2W81

  • PubMed Abstract: 

    The complement system is an essential component of the innate and acquired immune system, and consists of a series of proteolytic cascades that are initiated by the presence of microorganisms. In health, activation of complement is precisely controlled through membrane-bound and soluble plasma-regulatory proteins including complement factor H (fH; ref. 2), a 155 kDa protein composed of 20 domains (termed complement control protein repeats). Many pathogens have evolved the ability to avoid immune-killing by recruiting host complement regulators and several pathogens have adapted to avoid complement-mediated killing by sequestering fH to their surface. Here we present the structure of a complement regulator in complex with its pathogen surface-protein ligand. This reveals how the important human pathogen Neisseria meningitidis subverts immune responses by mimicking the host, using protein instead of charged-carbohydrate chemistry to recruit the host complement regulator, fH. The structure also indicates the molecular basis of the host-specificity of the interaction between fH and the meningococcus, and informs attempts to develop novel therapeutics and vaccines.


  • Organizational Affiliation: 
    • Centre for Molecular Microbiology and Infection, Imperial College, London SW7 2AZ, UK.

Macromolecule Content 

  • Total Structure Weight: 123.62 kDa 
  • Atom Count: 8,836 
  • Modeled Residue Count: 1,083 
  • Deposited Residue Count: 1,128 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
COMPLEMENT FACTOR H
A, B, E
123Homo sapiensMutation(s): 1 
UniProt & NIH Common Fund Data Resources
Find proteins for P08603 (Homo sapiens)
Explore P08603 
Go to UniProtKB:  P08603
PHAROS:  P08603
GTEx:  ENSG00000000971 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08603
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
FACTOR H BINDING PROTEIN
C, D, F
253Neisseria meningitidisMutation(s): 0 
UniProt
Find proteins for Q9JXV4 (Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58))
Explore Q9JXV4 
Go to UniProtKB:  Q9JXV4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JXV4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free:  0.283 (Depositor), 0.299 (DCC) 
  • R-Value Work:  0.274 (Depositor), 0.289 (DCC) 
  • R-Value Observed: 0.275 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 185.52α = 90
b = 52.21β = 118.19
c = 128.78γ = 90
Software Package:
Software NamePurpose
SOLOMONmodel building
xia2data reduction
xia2data scaling
BUSTER-TNTphasing
PHASERphasing
SHARPphasing
SOLOMONphasing
DMphasing

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-03
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-12-13
    Changes: Data collection, Database references, Other, Refinement description
  • Version 1.4: 2024-11-06
    Changes: Structure summary