2W56

Structure of the hypothetical protein VC0508 from Vibrio cholerae VSP- II pathogenicity island

• PDB DOI: https://doi.org/10.2210/pdb2W56/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Vibrio cholerae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2008-12-05 Released: 2010-08-25 
• Deposition Author(s): Sheikh, M.A., Taylor, G.L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.275 
• R-Value Work: 0.224 
• R-Value Observed: 0.227 

Starting Model: experimental

Literature

Structure of the Hypothetical Protein Vc0508 from Vibrio Cholerae Vsp-II Pathogenicity Island

Sheikh, M.A., Taylor, G.L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 34.04 kDa 
• Atom Count: 2,441 
• Modelled Residue Count: 274 
• Deposited Residue Count: 294 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VC0508	A	147	Vibrio cholerae	Mutation(s): 0
UniProt
Find proteins for Q9KUL0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KUL0  Go to UniProtKB:  Q9KUL0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
VC0508	B	147	Vibrio cholerae	Mutation(s): 0
UniProt
Find proteins for Q9KUL0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KUL0  Go to UniProtKB:  Q9KUL0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.275 
• R-Value Work: 0.224 
• R-Value Observed: 0.227 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.102	α = 90
b = 70.596	β = 110.64
c = 51.382	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-25 
Deposition Author(s): Sheikh, M.A., Taylor, G.L.

Revision History  

• Version 1.0: 2010-08-25
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Other, Refinement description