2V9Z | pdb_00002v9z

Structure of the Rhodococcus haloalkane dehalogenase mutant with enhanced enantioselectivity

PDB DOI: https://doi.org/10.2210/pdb2V9Z/pdb

Classification: HYDROLASE
Organism(s): Rhodococcus rhodochrous
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2007-08-28 Released: 2008-09-16
Deposition Author(s): Koudelakova, T., Prokop, Z., Sato, Y., Lapkouski, M., Chovancova, E., Monincova, M., Jesenska, A., Emmer, J., Senda, T., Nagata, Y., Kuta Smatanova, I., Damborsky, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.267 (Depositor), 0.261 (DCC)
R-Value Work:
0.195 (Depositor), 0.197 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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This is version 1.5 of the entry. See complete history.

Literature

Rational Engineering of Rhodococcus Haloalkane Dehalogenase with Enhanced Enantioselectivity

Koudelakova, T., Prokop, Z., Sato, Y., Lapkouski, M., Chovancova, E., Monincova, M., Jesenska, A., Emmer, J., Senda, T., Nagata, Y., Kuta Smatanova, I., Damborsky, J.

To be published.

Macromolecule Content

Total Structure Weight: 34.44 kDa
Atom Count: 2,415
Modeled Residue Count: 302
Deposited Residue Count: 304
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HALOALKANE DEHALOGENASE	A	304	Rhodococcus rhodochrous	Mutation(s): 8 EC: 3.8.1.5
UniProt
Find proteins for P0A3G2 (Rhodococcus rhodochrous) Explore P0A3G2 Go to UniProtKB: P0A3G2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A3G2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.267 (Depositor), 0.261 (DCC)
R-Value Work: 0.195 (Depositor), 0.197 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.739	α = 90
b = 68.9	β = 90
c = 84.695	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-09-16

Deposition Author(s):

Koudelakova, T.

Kuta Smatanova, I.

Revision History (Full details and data files)

Version 1.0: 2008-09-16
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-06-28
Changes: Data collection
Version 1.4: 2019-05-08
Changes: Data collection, Experimental preparation
Version 1.5: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.