2V6H | pdb_00002v6h

Crystal structure of the C1 domain of cardiac myosin binding protein-C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 
    0.241 (Depositor), 0.229 (DCC) 
  • R-Value Work: 
    0.176 (DCC) 
  • R-Value Observed: 
    0.184 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2V6H

This is version 1.5 of the entry. See complete history

Literature

Crystal structure of the C1 domain of cardiac myosin binding protein-C: implications for hypertrophic cardiomyopathy.

Govada, L.Carpenter, L.da Fonseca, P.C.Helliwell, J.R.Rizkallah, P.Flashman, E.Chayen, N.E.Redwood, C.Squire, J.M.

(2008) J Mol Biology 378: 387-397

  • DOI: https://doi.org/10.1016/j.jmb.2008.02.044
  • Primary Citation Related Structures: 
    2V6H

  • PubMed Abstract: 

    C-protein is a major component of skeletal and cardiac muscle thick filaments. Mutations in the gene encoding cardiac C-protein [cardiac myosin binding protein-C (cMyBP-C)] are one of the principal causes of hypertrophic cardiomyopathy. cMyBP-C is a string of globular domains including eight immunoglobulin-like and three fibronectin-like domains termed C0-C10. It binds to myosin and titin, and probably to actin, and may have both a structural and a regulatory role in muscle function. To help to understand the pathology of the known mutations, we have solved the structure of the immunoglobulin-like C1 domain of MyBP-C by X-ray crystallography to a resolution of 1.55 A. Mutations associated with hypertrophic cardiomyopathy are clustered at one end towards the C-terminus, close to the important C1C2 linker, where they alter the structural integrity of this region and its interactions.


  • Organizational Affiliation
    • Biomolecular Medicine Department, SORA Division, Imperial College London, London SW7 2AZ, UK.

Macromolecule Content 

  • Total Structure Weight: 12.05 kDa 
  • Atom Count: 1,010 
  • Modeled Residue Count: 104 
  • Deposited Residue Count: 108 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MYOSIN-BINDING PROTEIN C, CARDIAC-TYPE108Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q14896 (Homo sapiens)
Explore Q14896 
Go to UniProtKB:  Q14896
PHAROS:  Q14896
GTEx:  ENSG00000134571 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14896
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free:  0.241 (Depositor), 0.229 (DCC) 
  • R-Value Work:  0.176 (DCC) 
  • R-Value Observed: 0.184 (Depositor) 
Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.848α = 90
b = 48.848β = 90
c = 95.132γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
SOLVEphasing
RESOLVEphasing
CNSphasing
REFMACphasing
SHELXL-97phasing
Cootmodel building
SHELXL-97refinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-07-22
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-08-23
    Changes: Database references, Refinement description
  • Version 1.4: 2019-05-08
    Changes: Data collection, Experimental preparation
  • Version 1.5: 2024-05-08
    Changes: Data collection, Database references, Other