2V36 | pdb_00002v36

Crystal structure of gamma-glutamyl transferase from Bacillus subtilis

PDB DOI: https://doi.org/10.2210/pdb2V36/pdb

Classification: TRANSFERASE
Organism(s): Bacillus subtilis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-06-13 Released: 2008-07-01
Deposition Author(s): Sharath, B., Prabhune, A.A., Suresh, C.G., Wilkinson, A.J., Brannigan, J.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.249 (Depositor), 0.240 (DCC)
R-Value Work:
0.220 (Depositor), 0.210 (DCC)
R-Value Observed:
0.221 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of Gamma-Glutamyl Transferase

Sharath, B., Prabhune, A.A., Suresh, C.G., Wilkinson, A.J., Brannigan, J.A.

To be published.

Macromolecule Content

Total Structure Weight: 125.11 kDa
Atom Count: 8,372
Modeled Residue Count: 1,074
Deposited Residue Count: 1,138
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GAMMA-GLUTAMYLTRANSPEPTIDASE LARGE CHAIN	A, C	376	Bacillus subtilis	Mutation(s): 0 EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt)
UniProt
Find proteins for P54422 (Bacillus subtilis (strain 168)) Explore P54422 Go to UniProtKB: P54422
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P54422
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GAMMA-GLUTAMYLTRANSPEPTIDASE SMALL CHAIN	B, D	193	Bacillus subtilis	Mutation(s): 0 EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt)
UniProt
Find proteins for P54422 (Bacillus subtilis (strain 168)) Explore P54422 Go to UniProtKB: P54422
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P54422
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.249 (Depositor), 0.240 (DCC)
R-Value Work: 0.220 (Depositor), 0.210 (DCC)
R-Value Observed: 0.221 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.256	α = 90
b = 108.766	β = 90
c = 161.347	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-01

Deposition Author(s):

Wilkinson, A.J.

Brannigan, J.A.

Revision History (Full details and data files)

Version 1.0: 2008-07-01
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-03-07
Changes: Source and taxonomy
Version 1.4: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.