2V33 | pdb_00002v33

High resolution crystal structure of domain III of E1 fusion glycoprotein of Semliki Forest Virus

PDB DOI: https://doi.org/10.2210/pdb2V33/pdb

Classification: VIRAL PROTEIN
Organism(s): Semliki Forest virus
Mutation(s): No

Deposited: 2007-06-11 Released: 2008-07-22
Deposition Author(s): Vaney, M.C., Rey, F.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.226 (Depositor), 0.227 (DCC)
R-Value Work:
0.198 (Depositor), 0.201 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

High Resolution Structure of Domain III from Class II Fusion Protein of Semliki Forest Virus

Vaney, M.C., Vigouroux, A., Rey, F.A.

To be published.

Macromolecule Content

Total Structure Weight: 18.82 kDa
Atom Count: 1,576
Modeled Residue Count: 182
Deposited Residue Count: 182
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E1 ENVELOPE GLYCOPROTEIN	A, B	91	Semliki Forest virus	Mutation(s): 0
UniProt
Find proteins for P03315 (Semliki forest virus) Explore P03315 Go to UniProtKB: P03315
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03315
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NO3 Query on NO3 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain D [auth A]	C [auth A], D [auth A]	NITRATE ION N O₃ NHNBFGGVMKEFGY-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Interactions & Density Focus chain C [auth A] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.226 (Depositor), 0.227 (DCC)
R-Value Work: 0.198 (Depositor), 0.201 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.343	α = 90
b = 62.659	β = 90
c = 113.735	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-22

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-07-22
Type: Initial release
Version 1.1: 2014-04-16
Changes: Database references, Derived calculations, Non-polymer description, Other, Version format compliance
Version 1.2: 2019-01-30
Changes: Data collection, Experimental preparation, Other
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
Version 1.4: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.