2SRT | pdb_00002srt

CATALYTIC DOMAIN OF HUMAN STROMELYSIN-1 AT PH 5.5 AND 40OC COMPLEXED WITH INHIBITOR

• PDB DOI: https://doi.org/10.2210/pdb2SRT/pdb
• Entry: 2SRT supersedes: 1SRT

• Classification: HYDROLASE/HYDROLASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1995-03-22 Released: 1995-07-10 
• Deposition Author(s): Gooley, P.R., O'Connell, J.F.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 30 

Literature

The NMR structure of the inhibited catalytic domain of human stromelysin-1.

Gooley, P.R., O'Connell, J.F., Marcy, A.I., Cuca, G.C., Salowe, S.P., Bush, B.L., Hermes, J.D., Esser, C.K., Hagmann, W.K., Springer, J.P., Johnson, B.A.

(1994) Nat Struct Biol 1: 111-118

• PubMed: 7656014 
• DOI: https://doi.org/10.1038/nsb0294-111
• Primary Citation Related Structures: 
  2SRT


• PubMed Abstract: 
  

  The three-dimensional structure of the catalytic domain of stromelysin-1 complexed with an N-carboxyl alkyl inhibitor has been determined by NMR methods. The global fold consists of three helices, a five stranded beta-sheet and a methionine located in a turn near the catalytic histidines, classifying stromelysin-1 as a metzincin. Stromelysin-1 is unique in having two independent zinc binding sites: a catalytic site and a structural site. The inhibitor binds in an extended conformation. The S1' subsite is a deep hydrophobic pocket, whereas S2' appears shallow and S3' open.

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Organizational Affiliation: 
• Department of Biophysical Chemistry, Merck Research Laboratories, Rahway, New Jersey 07065-0900, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 20.03 kDa 
• Atom Count: 1,413 
• Modeled Residue Count: 173 
• Deposited Residue Count: 173 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
STROMELYSIN-1	A	173	Homo sapiens	Mutation(s): 0  Gene Names: HUMAN STROMELYSIN-1 EC: 3.4.24.17
UniProt & NIH Common Fund Data Resources
Find proteins for P08254 (Homo sapiens) Explore P08254  Go to UniProtKB:  P08254
PHAROS:  P08254 GTEx:  ENSG00000149968

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
8MI	D [auth A]	N-(R-CARBOXY-ETHYL)-ALPHA-(S)-(2-PHENYLETHYL)GLYCYL-L-ARGININE-N-PHENYLAMIDE C25 H35 N6 O4 HDGWGGCPTVXRNA-QMMLZNLJSA-O
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 30 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1995-07-10 
Deposition Author(s): Gooley, P.R., O'Connell, J.F.
• This entry supersedes: 1SRT

Revision History  

• Version 1.0: 1995-07-10
  Type: Initial release
  
• Version 1.1: 2008-03-03
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2012-02-29
  Changes: Database references
• Version 2.0: 2021-09-29
  Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Structure summary
• Version 2.1: 2024-05-22
  Changes: Data collection