2RPS | pdb_00002rps

Solution structure of a novel insect chemokine isolated from integument


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

A novel peptide mediates aggregation and migration of hemocytes from an insect

Nakatogawa, S.Oda, Y.Kamiya, M.Kamijima, T.Aizawa, T.Clark, K.D.Demura, M.Kawano, K.Strand, M.R.Hayakawa, Y.

(2009) Curr Biol 19: 779-785

  • DOI: https://doi.org/10.1016/j.cub.2009.03.050
  • Primary Citation Related Structures: 
    2RPS

  • PubMed Abstract: 

    Insect blood cells (hemocytes) comprise an essential arm of the immune system [1-7]. Several factors mediating recognition and phagocytosis of foreign intruders by hemocytes have been identified, but the mechanisms regulating hemocyte movement remain fragmentary. Embryonic hemocytes from Drosophila migrate along stereotypical routes in response to chemotactic signals from PVF ligands, members of the platelet-derived growth factor family [8-12]. Embryonic and larval hemocytes also accumulate at external wounds [11-13], but PVFs are not required for this response, suggesting involvement by other, unknown factors. Here we report the identification of hemocyte chemotactic peptide (HCP) from the moth Pseudaletia separata and present evidence that it stimulates aggregation and directed movement of phagocytic hemocytes. Spatiotemporal studies revealed that HCP is expressed in both epidermal cells and hemocytes, whereas structure-function studies identified post-translational modifications important for activity. HCP also shares similarities with another group of cytokines from moths called ENF peptides [14-17]. Taken together, our results identify HCP as a chemotactic cytokine that enhances clotting at wound sites in larvae.


  • Organizational Affiliation
    • Graduate School of Science, Hokkaido University, Sapporo, 060-0189, Japan.

Macromolecule Content 

  • Total Structure Weight: 3.55 kDa 
  • Atom Count: 245 
  • Modeled Residue Count: 32 
  • Deposited Residue Count: 32 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chemokine32Mythimna separataMutation(s): 0 
UniProt
Find proteins for B7XBA7 (Mythimna separata)
Explore B7XBA7 
Go to UniProtKB:  B7XBA7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB7XBA7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-06-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2024-11-20
    Changes: Data collection, Structure summary