2RLL | pdb_00002rll

CCR5 Nt(7-15)

• PDB DOI: https://doi.org/10.2210/pdb2RLL/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2007-07-21 Released: 2007-09-25 
• Deposition Author(s): Bewley, C.A., Lam, S.N.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 1 
• Selection Criteria: structures with the least restraint violations 

Literature

Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4

Huang, C.-C., Lam, S.N., Acharya, P., Tang, M., Xiang, S.-H., Hussan, S.S., Stanfield, R.L., Robinson, J., Sodroski, J., Wilson, I.A., Wyatt, R., Bewley, C.A., Kwong, P.D.

(2007) Science 317: 1930-1934

• PubMed: 17901336 
• DOI: https://doi.org/10.1126/science.1145373
• Primary Citation Related Structures: 
  2QAD, 2RLL


• PubMed Abstract: 
  

  The CCR5 co-receptor binds to the HIV-1 gp120 envelope glycoprotein and facilitates HIV-1 entry into cells. Its N terminus is tyrosine-sulfated, as are many antibodies that react with the co-receptor binding site on gp120. We applied nuclear magnetic resonance and crystallographic techniques to analyze the structure of the CCR5 N terminus and that of the tyrosine-sulfated antibody 412d in complex with gp120 and CD4. The conformations of tyrosine-sulfated regions of CCR5 (alpha-helix) and 412d (extended loop) are surprisingly different. Nonetheless, a critical sulfotyrosine on CCR5 and on 412d induces similar structural rearrangements in gp120. These results now provide a framework for understanding HIV-1 interactions with the CCR5 N terminus during viral entry and define a conserved site on gp120, whose recognition of sulfotyrosine engenders posttranslational mimicry by the immune system.

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Organizational Affiliation: 
• Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 1.31 kDa 
• Atom Count: 90 
• Modeled Residue Count: 9 
• Deposited Residue Count: 9 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
9-mer from C-C chemokine receptor type 5	A	9	N/A	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P51681 (Homo sapiens) Explore P51681  Go to UniProtKB:  P51681
PHAROS:  P51681 GTEx:  ENSG00000160791

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
TYS	A	L-PEPTIDE LINKING	C9 H11 N O6 S		TYR

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 1 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-09-25 
Deposition Author(s): Bewley, C.A., Lam, S.N.

Revision History  

• Version 1.0: 2007-09-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 2.0: 2023-11-15
  Changes: Atomic model, Data collection
• Version 2.1: 2024-10-30
  Changes: Structure summary