Download MendeleyCrystal Structure of the Putative Phosphohistidine Phosphatase SixA from Agrobacterium tumefaciens.
Kim, Y., Binkowski, T., Xu, X., Gu, J., Que, Q., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
2RFL
Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb2RFL/pdb
- Classification: HYDROLASE, ISOMERASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-10-01 Released: 2007-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.283
- R-Value Work: 0.230
- R-Value Observed: 0.236
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative phosphohistidine phosphatase SixA | 173 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: AGR_C_2511, Atu1358 EC: 5.4.2.1 (PDB Primary Data), 3.1.3.13 (PDB Primary Data), 5.4.2.4 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for A9CJ67 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CJ67 Go to UniProtKB: A9CJ67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CJ67 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | J [auth A], L [auth G] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | K [auth D] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| SCN Query on SCN | I [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.283
- R-Value Work: 0.230
- R-Value Observed: 0.236
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.966 | α = 90 |
| b = 201.503 | β = 113.98 |
| c = 72.717 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-23 Deposition Author(s): Kim, Y., Binkowski, T., Xu, X., Edwards, A.M., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-10-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
