2RF0 | pdb_00002rf0

Crystal structure of human mixed lineage kinase MAP3K10 SH3 domain

• PDB DOI: https://doi.org/10.2210/pdb2RF0/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-09-27 Released: 2007-10-23 
• Deposition Author(s): Ugochukwu, E., Eswaran, J., Elkins, J., Keates, T., Pike, A.C.W., Berridge, G., Savitsky, P., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., von Delft, F., Knapp, S., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.230 (Depositor), 0.232 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.194 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Starting Models: experimental

Literature

The crystal structure of human Mixed lineage kinase MAP3K10 SH3 domain.

Ugochukwu, E., Eswaran, J., Elkins, J., Keates, T., Pike, A.C.W., Berridge, G., Savitsky, P., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., von Delft, F., Knapp, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.06 kDa 
• Atom Count: 1,851 
• Modeled Residue Count: 241 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitogen-activated protein kinase kinase kinase 10	A, B, C, D	89	Homo sapiens	Mutation(s): 0  Gene Names: MAP3K10, MLK2, MST EC: 2.7.11.25
UniProt & NIH Common Fund Data Resources
Find proteins for Q02779 (Homo sapiens) Explore Q02779  Go to UniProtKB:  Q02779
PHAROS:  Q02779 GTEx:  ENSG00000130758

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	E [auth A], F [auth D]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.230 (Depositor), 0.232 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.194 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: P 3₂ 1 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.68	α = 90
b = 69.68	β = 90
c = 103.98	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-10-23 
Deposition Author(s): Ugochukwu, E., Eswaran, J., Elkins, J., Keates, T., Pike, A.C.W., Berridge, G., Savitsky, P., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., von Delft, F., Knapp, S., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-10-23
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Refinement description