2RCI | pdb_00002rci

High-resolution crystal structure of activated Cyt2Ba monomer from Bacillus thuringiensis subsp. israelensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.216 (Depositor), 0.199 (DCC) 
  • R-Value Work: 
    0.187 (Depositor), 0.185 (DCC) 
  • R-Value Observed: 
    0.188 (Depositor) 

Starting Model: experimental
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Literature

High-resolution crystal structure of activated Cyt2Ba monomer from Bacillus thuringiensis subsp. israelensis.

Cohen, S.Dym, O.Albeck, S.Ben-Dov, E.Cahan, R.Firer, M.Zaritsky, A.

(2008) J Mol Biology 380: 820-827

  • DOI: https://doi.org/10.1016/j.jmb.2008.05.010
  • Primary Citation Related Structures: 
    2RCI

  • PubMed Abstract: 

    The Cyt family of proteins consists of delta-endotoxins expressed during sporulation of several subspecies of Bacillus thuringiensis. Its members possess insecticidal, hemolytic, and cytolytic activities through pore formation and attract attention due to their potential use as vehicles for targeted membrane destruction. The delta-endotoxins of subsp. israelensis include three Cyt species: a major Cyt1Aa and two minor proteins, Cyt2Ba and Cyt1Ca. A cleaved Cyt protein that lacks the N- and C-terminal segments forms a toxic monomer. Here, we describe the crystal structure of Cyt2Ba, cleaved at its amino and carboxy termini by bacterial endogenous protease(s). Overall, its fold resembles that of the previously described volvatoxin A2 and the nontoxic form of Cyt2Aa. The structural similarity between these three proteins may provide information regarding the mechanism(s) of membrane-perforating toxins.


  • Organizational Affiliation
    • Department of Life Sciences, Ben-Gurion University of the Negev, POB 653, Be'er-Sheva 84105, Israel. shmulikc@ariel.ac.il

Macromolecule Content 

  • Total Structure Weight: 22.97 kDa 
  • Atom Count: 1,609 
  • Modeled Residue Count: 188 
  • Deposited Residue Count: 204 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Type-2Ba cytolytic delta-endotoxin204Bacillus thuringiensis serovar israelensisMutation(s): 0 
Gene Names: cyt2Ba1cyt2Ba7cytB
UniProt
Find proteins for Q45723 (Bacillus thuringiensis subsp. israelensis)
Explore Q45723 
Go to UniProtKB:  Q45723
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ45723
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.216 (Depositor), 0.199 (DCC) 
  • R-Value Work:  0.187 (Depositor), 0.185 (DCC) 
  • R-Value Observed: 0.188 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.481α = 90
b = 43.259β = 112.44
c = 55.65γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
BALBESphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-07-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-08-30
    Changes: Data collection, Database references, Refinement description