2R6Z | pdb_00002r6z

Crystal structure of the SAM-dependent methyltransferase NGO1261 from Neisseria gonorrhoeae, Northeast Structural Genomics Consortium Target NgR48

PDB DOI: https://doi.org/10.2210/pdb2R6Z/pdb

Classification: TRANSFERASE
Organism(s): Neisseria gonorrhoeae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-09-06 Released: 2007-09-25
Deposition Author(s): Forouhar, F., Abashidze, M., Seetharaman, J., Mao, L., Nwosu, C., Fang, Y., Xiao, R., Baran, M.C., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.231 (Depositor), 0.246 (DCC)
R-Value Work:
0.215 (Depositor), 0.230 (DCC)
R-Value Observed:
0.215 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the SAM-dependent methyltransferase NGO1261 from Neisseria gonorrhoeae.

Forouhar, F., Abashidze, M., Seetharaman, J., Mao, L., Nwosu, C., Fang, Y., Xiao, R., Baran, M.C., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published.

Macromolecule Content

Total Structure Weight: 57.23 kDa
Atom Count: 4,051
Modeled Residue Count: 467
Deposited Residue Count: 516
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0341 protein in rsp 3' region	A, B	258	Neisseria gonorrhoeae	Mutation(s): 0 Gene Names: NGO1261 EC: 2.1.1.242
UniProt
Find proteins for P72077 (Neisseria gonorrhoeae) Explore P72077 Go to UniProtKB: P72077
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P72077
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.231 (Depositor), 0.246 (DCC)
R-Value Work: 0.215 (Depositor), 0.230 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.233	α = 90
b = 43.186	β = 97.54
c = 103.57	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
SnB	phasing
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-09-25

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-09-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Structure summary