2R1U | pdb_00002r1u

DJ-1 activation by catechol quinone modification

PDB DOI: https://doi.org/10.2210/pdb2R1U/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-08-23 Released: 2008-08-26
Deposition Author(s): Zhongtao, Z., Yue, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.195 (Depositor), 0.194 (DCC)
R-Value Work:
0.185 (Depositor), 0.183 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 2R1U

This is version 1.3 of the entry. See complete history.

Literature

DJ-1 activation by catechol quinone modification

Zhongtao, Z., Yue, F.

To be published.

Macromolecule Content

Total Structure Weight: 39.34 kDa
Atom Count: 3,168
Modeled Residue Count: 374
Deposited Residue Count: 374
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein DJ-1	A, B	187	Homo sapiens	Mutation(s): 0 Gene Names: PARK7 EC: 3.5.1 (UniProt), 3.1.2 (UniProt), 3.5.1.124 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q99497 (Homo sapiens) Explore Q99497 Go to UniProtKB: Q99497
PHAROS: Q99497 GTEx: ENSG00000116288
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99497
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.195 (Depositor), 0.194 (DCC)
R-Value Work: 0.185 (Depositor), 0.183 (DCC)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.688	α = 90
b = 75.688	β = 90
c = 75.045	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction
CNS	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-08-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-08-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-01-24
Changes: Database references, Source and taxonomy, Structure summary
Version 1.3: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.