2QOP | pdb_00002qop

Crystal structure of the transcriptional regulator AcrR from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 
    0.273 (Depositor), 0.328 (DCC) 
  • R-Value Work: 
    0.228 (Depositor), 0.337 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2QOP

This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the transcriptional regulator AcrR from Escherichia coli.

Li, M.Gu, R.Su, C.C.Routh, M.D.Harris, K.C.Jewell, E.S.McDermott, G.Yu, E.W.

(2007) J Mol Biology 374: 591-603

  • DOI: https://doi.org/10.1016/j.jmb.2007.09.064
  • Primary Citation Related Structures: 
    2QOP

  • PubMed Abstract: 

    The AcrAB multidrug efflux pump, which belongs to the resistance nodulation division (RND) family, recognizes and extrudes a wide range of antibiotics and chemotherapeutic agents and causes the intrinsic antibiotic resistance in Escherichia coli. The expression of AcrAB is controlled by the transcriptional regulator AcrR, whose open reading frame is located 141 bp upstream of the acrAB operon. To understand the structural basis of AcrR regulation, we have determined the crystal structure of AcrR to 2.55-A resolution, revealing a dimeric two-domain molecule with an entirely helical architecture similar to members of the TetR family of transcriptional regulators. Each monomer of AcrR forms a multientrance pocket of 350 A(3) in the ligand-binding domain. The ligand-binding pocket is surrounded with mostly hydrophobic residues. In addition, a completely buried negatively charged glutamate, expected to be critical for drug binding, is located at the center of the binding pocket. The crystal structure provides novel insight into the mechanisms of ligand binding and AcrR regulation.


  • Organizational Affiliation
    • Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA.

Macromolecule Content 

  • Total Structure Weight: 24.8 kDa 
  • Atom Count: 1,706 
  • Modeled Residue Count: 207 
  • Deposited Residue Count: 215 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HTH-type transcriptional regulator acrR215Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0ACS9 (Escherichia coli (strain K12))
Explore P0ACS9 
Go to UniProtKB:  P0ACS9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ACS9
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free:  0.273 (Depositor), 0.328 (DCC) 
  • R-Value Work:  0.228 (Depositor), 0.337 (DCC) 
Space Group: P 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.218α = 90
b = 54.574β = 90
c = 73.726γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SnBphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-02-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references