2QL0 | pdb_00002ql0

Zinc-substituted Rubredoxin from Desulfovibrio Vulgaris

PDB DOI: https://doi.org/10.2210/pdb2QL0/pdb
BMRB: 15374

Classification: ELECTRON TRANSPORT
Organism(s): Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-07-12 Released: 2008-07-08
Deposition Author(s): Goodfellow, B.J., Nunes, S.G., Volkman, B.F., Moura, J.G., Macedo, A.L., Duarte, I.C., Markley, J.L., Moura, I.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2QL0

This is version 1.3 of the entry. See complete history.

Literature

Goodfellow, B.J., Nunes, S.G., Volkman, B.F., Moura, J.J.G., Macedo, A.L., Duarte, I.C., Markley, J.L., Moura, I.

To be published.

Macromolecule Content

Total Structure Weight: 5.64 kDa
Atom Count: 389
Modeled Residue Count: 52
Deposited Residue Count: 52
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rubredoxin	A	52	N/A	Mutation(s): 0 Gene Names: rub
UniProt
Find proteins for P00269 (Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)) Explore P00269 Go to UniProtKB: P00269
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00269
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-07-08

Deposition Author(s):

Goodfellow, B.J.

Revision History (Full details and data files)

Version 1.0: 2008-07-08
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.