Re-Establishing a Metal-Binding Scaffold with Full Activity in the Metal-Independent Kdo8P Synthase from Neisseria Meningitidis
Cochrane, F.C., Patchett, M.L., Jameson, G.B., Parker, E.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase | 280 | Neisseria meningitidis serogroup B | Mutation(s): 0  Gene Names: kdsA EC: 2.5.1.55 | ![]() | |
UniProt | |||||
Find proteins for Q9JZ55 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JZ55  Go to UniProtKB:  Q9JZ55 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9JZ55 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | I [auth C], J [auth C], K [auth C], N [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | E [auth B], F [auth C], G [auth C], L [auth D], M [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | H [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 81.515 | α = 90 |
b = 85.295 | β = 90 |
c = 162.686 | γ = 90 |
Software Name | Purpose |
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d*TREK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
d*TREK | data reduction |
MOLREP | phasing |