Download MendeleyCrystal structure of Uncharacterized protein TM0581 (TM0581) from Thermotoga maritima at 2.20 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2Q78
Crystal structure of a thioesterase-like protein (tm0581) from thermotoga maritima msb8 at 2.20 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2Q78/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-06-06 Released: 2007-06-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.224
- R-Value Work: 0.175
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 153 | Thermotoga maritima MSB8 | Mutation(s): 5 Gene Names: TM_0581 |  | |
UniProt | |||||
Find proteins for Q9WZ50 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZ50 Go to UniProtKB: Q9WZ50 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WZ50 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLC Query on MLC | I [auth A] J [auth B] K [auth C] M [auth D] N [auth E] | MALONYL-COENZYME A C24 H38 N7 O19 P3 S LTYOQGRJFJAKNA-DVVLENMVSA-N |  | ||
| CL Query on CL | L [auth D], O [auth F] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.224
- R-Value Work: 0.175
- R-Value Observed: 0.177
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M32Q78
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.347 | α = 90 |
| b = 90.706 | β = 90 |
| c = 230.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-06-19 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-06-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence - Version 1.5: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.6: 2023-01-25
Changes: Database references, Derived calculations - Version 1.7: 2024-10-16
Changes: Data collection, Refinement description, Structure summary
