2PPT | pdb_00002ppt

Crystal structure of thioredoxin-2

PDB DOI: https://doi.org/10.2210/pdb2PPT/pdb

Classification: OXIDOREDUCTASE
Organism(s): Rhodobacter capsulatus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-04-30 Released: 2007-10-02
Deposition Author(s): Ye, J., Chou, S., Beckwith, J., Rapoport, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free:
0.219 (Depositor), 0.219 (DCC)
R-Value Work:
0.205 (Depositor), 0.204 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of thioredoxin-2

Ye, J., Chou, S., Fuselier, J., Li, J., Beckwith, J., Rapoport, T.

To be published.

Macromolecule Content

Total Structure Weight: 32.53 kDa
Atom Count: 2,264
Modeled Residue Count: 292
Deposited Residue Count: 310
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
thioredoxin-2	A, B	155	Rhodobacter capsulatus	Mutation(s): 0 Gene Names: thioredoxin EC: 1.8.1.8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain E [auth B] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain E [auth B] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B], E [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B] Focus chain E [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free: 0.219 (Depositor), 0.219 (DCC)
R-Value Work: 0.205 (Depositor), 0.204 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.784	α = 90
b = 68.184	β = 112.04
c = 64.124	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
SHELXS	phasing
CNS	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-10-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-10-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations