2PH3 | pdb_00002ph3

Crystal structure of 3-oxoacyl-[acyl carrier protein] reductase TTHA0415 from Thermus thermophilus

PDB DOI: https://doi.org/10.2210/pdb2PH3/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-04-10 Released: 2007-05-08
Deposition Author(s): Swindell II, J.T., Chen, L., Zhu, J., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Fu, Z.-Q., Chrzas, J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free:
0.229 (Depositor), 0.232 (DCC)
R-Value Work:
0.189 (Depositor), 0.199 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of 3-oxoacyl-[acyl carrier protein] reductase TTHA0415 from Thermus thermophilus

Swindell II, J.T., Chen, L., Zhu, J., Ebihara, A., Shinkai, A., Kuramitsu, S., Yokoyama, S., Fu, Z.-Q., Chrzas, J., Rose, J.P., Wang, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 52.49 kDa
Atom Count: 3,809
Modeled Residue Count: 482
Deposited Residue Count: 490
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-[acyl carrier protein] reductase	A, B	245	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: TTHA0415 EC: 1.1.1.100
UniProt
Find proteins for Q5SL78 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SL78 Go to UniProtKB: Q5SL78
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SL78
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free: 0.229 (Depositor), 0.232 (DCC)
R-Value Work: 0.189 (Depositor), 0.199 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.525	α = 90
b = 76.525	β = 90
c = 137.562	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
SERGUI	data collection
HKL-2000	data reduction
SGXPRO	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-05-08

Deposition Author(s):

Swindell II, J.T.

Southeast Collaboratory for Structural Genomics (SECSG)

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-05-08
Type: Initial release
Version 1.1: 2008-04-03
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2018-01-24
Changes: Database references, Structure summary
Version 1.5: 2023-08-30
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.