2P5P | pdb_00002p5p

Crystal Structure Analysis of the West Nile virus envelope (E) protein domain III

PDB DOI: https://doi.org/10.2210/pdb2P5P/pdb

Classification: VIRAL PROTEIN
Organism(s): West Nile virus
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2007-03-16 Released: 2008-03-18
Deposition Author(s): Gao, F., Yuan, F., Gao, G.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.276 (Depositor)
R-Value Work:
0.244 (Depositor), 0.258 (DCC)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure Analysis of the West Nile virus envelope (E) protein domain III

Liu, J., Gao, F., Yuan, F., Gao, G.F.

To be published.

Macromolecule Content

Total Structure Weight: 36.73 kDa
Atom Count: 2,457
Modeled Residue Count: 303
Deposited Residue Count: 351
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	A, B, C	117	West Nile virus	Mutation(s): 0
UniProt
Find proteins for P06935 (West Nile virus) Explore P06935 Go to UniProtKB: P06935
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P06935
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.276 (Depositor)
R-Value Work: 0.244 (Depositor), 0.258 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.56	α = 90
b = 59.69	β = 90
c = 95.03	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-03-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-03-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-10-25
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.