2OX4

Crystal structure of putative dehydratase from Zymomonas mobilis ZM4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.145 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Crystal Structure of Putative Dehydratase from Zymomonas Mobilis Zm4

Patskovsky, Y.Toro, R.Sauder, J.M.Freeman, J.C.Bain, K.Gheyi, T.Wasserman, S.R.Smith, D.Gerlt, J.Burley, S.K.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative mandelate racemase
A, B, C, D, E
A, B, C, D, E, F, G, H
403Zymomonas mobilisMutation(s): 0 
Gene Names: rspAZMO1264
EC: 5.1.2.2
UniProt
Find proteins for Q5NN22 (Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4))
Explore Q5NN22 
Go to UniProtKB:  Q5NN22
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5NN22
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AA [auth F]
DA [auth G]
EA [auth G]
FA [auth G]
HA [auth H]
AA [auth F],
DA [auth G],
EA [auth G],
FA [auth G],
HA [auth H],
J [auth A],
K [auth A],
N [auth B],
P [auth C],
Q [auth C],
T [auth D],
U [auth D],
W [auth E],
Z [auth F]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
BA [auth G],
L [auth B],
S [auth D],
Y [auth F]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG
Query on MG

Download Ideal Coordinates CCD File 
CA [auth G]
GA [auth H]
I [auth A]
M [auth B]
O [auth C]
CA [auth G],
GA [auth H],
I [auth A],
M [auth B],
O [auth C],
R [auth D],
V [auth E],
X [auth F]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.145 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 190.178α = 90
b = 190.409β = 90
c = 85.922γ = 90
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
MAR345data collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2007-03-06
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description
  • Version 1.4: 2018-11-14
    Changes: Data collection, Structure summary
  • Version 1.5: 2021-02-03
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.6: 2023-08-30
    Changes: Data collection, Database references, Refinement description