2OQ0 | pdb_00002oq0

Crystal Structure of the First HIN-200 Domain of Interferon-Inducible Protein 16

PDB DOI: https://doi.org/10.2210/pdb2OQ0/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-01-30 Released: 2007-02-27
Deposition Author(s): Lam, R., Liao, J.C.C., Ravichandran, M., Ma, J., Tempel, W., Chirgadze, N.Y., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.260 (Depositor), 0.260 (DCC)
R-Value Work:
0.208 (Depositor), 0.209 (DCC)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2OQ0

This is version 1.5 of the entry. See complete history.

Literature

Crystal Structure of the First HIN-200 Domain of Interferon-Inducible Protein 16

Liao, J.C.C., Lam, R., Ravichandran, M., Ma, J., Tempel, W., Chirgadze, N.Y., Arrowsmith, C.H.

To be published.

Macromolecule Content

Total Structure Weight: 96.66 kDa
Atom Count: 6,320
Modeled Residue Count: 757
Deposited Residue Count: 824
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-interferon-inducible protein Ifi-16	A, B, C, D	206	Homo sapiens	Mutation(s): 6 Gene Names: IFI16, IFNGIP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q16666 (Homo sapiens) Explore Q16666 Go to UniProtKB: Q16666
PHAROS: Q16666 GTEx: ENSG00000163565
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q16666
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain E [auth C] MOL2 format, chain E [auth C] mmCIF format, chain E [auth C]	E [auth C]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth C] Interactions & Density Focus chain E [auth C]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.260 (Depositor), 0.260 (DCC)
R-Value Work: 0.208 (Depositor), 0.209 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.335	α = 90
b = 88.959	β = 99.37
c = 112.831	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
JDirector	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-02-27

Deposition Author(s):

Ravichandran, M.

Chirgadze, N.Y.

Arrowsmith, C.H.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-02-27
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations
Version 1.5: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.