2N8L | pdb_00002n8l

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the KH3 RNA target

• PDB DOI: https://doi.org/10.2210/pdb2N8L/pdb
• NAKB: 2N8L
• BMRB: 25854

• Classification: RNA BINDING PROTEIN/RNA
• Organism(s): Gallus gallus, synthetic construct
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2015-10-21 Released: 2017-01-25 
• Deposition Author(s): Nicastro, G., Candel, A.M., Ramos, A., Hollingworth, D.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 12 
• Selection Criteria: structures with the lowest energy 

Literature

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target GCACACCC

Nicastro, G., Candel, A.M., Ramos, A., Hollingworth, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 23.17 kDa 
• Atom Count: 1,621 
• Modelled Residue Count: 199 
• Deposited Residue Count: 199 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Insulin-like growth factor 2 mRNA-binding protein 1	A	191	Gallus gallus	Mutation(s): 3  Gene Names: IGF2BP1, VICKZ1, ZBP1
UniProt
Find proteins for O42254 (Gallus gallus) Explore O42254  Go to UniProtKB:  O42254

Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA (5'-R(P*GP*CP*AP*CP*AP*CP*CP*C)-3')	B	8	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 12 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-01-25 
Deposition Author(s): Nicastro, G., Candel, A.M., Ramos, A., Hollingworth, D.

Revision History  

• Version 1.0: 2017-01-25
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Data collection, Database references, Other
• Version 1.2: 2024-05-15
  Changes: Data collection, Database references