2N35 | pdb_00002n35

Fusion to a Highly Stable Consensus Albumin Binding Domain Allows for Tunable Pharmacokinetics


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2N35

This is version 1.3 of the entry. See complete history

Literature

Fusion to a highly stable consensus albumin binding domain allows for tunable pharmacokinetics.

Jacobs, S.A.Gibbs, A.C.Conk, M.Yi, F.Maguire, D.Kane, C.O'Neil, K.T.

(2015) Protein Eng Des Sel 28: 385-393

  • DOI: https://doi.org/10.1093/protein/gzv040
  • Primary Citation Related Structures: 
    2N35

  • PubMed Abstract: 

    A number of classes of proteins have been engineered for high stability using consensus sequence design methods. Here we describe the engineering of a novel albumin binding domain (ABD) three-helix bundle protein. The resulting engineered ABD molecule, called ABDCon, is expressed at high levels in the soluble fraction of Escherichia coli and is highly stable, with a melting temperature of 81.5°C. ABDCon binds human, monkey and mouse serum albumins with affinity as high as 61 pM. The solution structure of ABDCon is consistent with the three-helix bundle design and epitope mapping studies enabled a precise definition of the albumin binding interface. Fusion of a 10 kDa scaffold protein to ABDCon results in a long terminal half-life of 60 h in mice and 182 h in cynomolgus monkeys. To explore the link between albumin affinity and in vivo exposure, mutations were designed at the albumin binding interface of ABDCon yielding variants that span an 11 000-fold range in affinity. The PK properties of five such variants were determined in mice in order to demonstrate the tunable nature of serum half-life, exposure and clearance with variations in albumin binding affinity.


  • Organizational Affiliation
    • Janssen Research & Development, L.L.C., 1400 Welsh & McKean Rd., Spring House, Pennsylvania, PA 19454, USA sjacobs9@its.jnj.com.

Macromolecule Content 

  • Total Structure Weight: 5.86 kDa 
  • Atom Count: 413 
  • Modeled Residue Count: 52 
  • Deposited Residue Count: 52 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Albumin binding protein52synthetic constructMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-02
    Type: Initial release
  • Version 1.1: 2015-10-21
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references