2MX2 | pdb_00002mx2

UBX-L domain of VCIP135

• PDB DOI: https://doi.org/10.2210/pdb2MX2/pdb
• BMRB: 25382

• Classification: HYDROLASE
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-12-07 Released: 2016-07-13 
• Deposition Author(s): Iwazu, T., Murayama, S., Igarashi, R., Hrioaki, H., Shirakawa, M., Tochio, H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Literature

Structure and interaction mode of the UBX-L domain of VCIP135 determined by solution NMR spectroscopy

Iwazu, T., Murayama, S., Igarashi, R., Hrioaki, H., Shirakawa, M., Tochio, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 9.82 kDa 
• Atom Count: 654 
• Modeled Residue Count: 81 
• Deposited Residue Count: 86 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Deubiquitinating protein VCIP135	A	86	Rattus norvegicus	Mutation(s): 0  Gene Names: Vcpip1, Vcip135 EC: 3.4.19.12
UniProt
Find proteins for Q8CF97 (Rattus norvegicus) Explore Q8CF97  Go to UniProtKB:  Q8CF97

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-13 
Deposition Author(s): Iwazu, T., Murayama, S., Igarashi, R., Hrioaki, H., Shirakawa, M., Tochio, H.

Revision History  

• Version 1.0: 2016-07-13
  Type: Initial release
  
• Version 2.0: 2024-05-01
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary