2MWI | pdb_00002mwi

The structure of the carboxy-terminal domain of DNTTIP1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 65 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 2MWI

This is version 1.2 of the entry. See complete history

Literature

Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting.

Itoh, T.Fairall, L.Muskett, F.W.Milano, C.P.Watson, P.J.Arnaudo, N.Saleh, A.Millard, C.J.El-Mezgueldi, M.Martino, F.Schwabe, J.W.

(2015) Nucleic Acids Res 43: 2033-2044

  • DOI: https://doi.org/10.1093/nar/gkv068
  • Primary Citation Related Structures: 
    2MWI, 4D6K

  • PubMed Abstract: 

    Recent proteomic studies have identified a novel histone deacetylase complex that is upregulated during mitosis and is associated with cyclin A. This complex is conserved from nematodes to man and contains histone deacetylases 1 and 2, the MIDEAS corepressor protein and a protein called DNTTIP1 whose function was hitherto poorly understood. Here, we report the structures of two domains from DNTTIP1. The amino-terminal region forms a tight dimerization domain with a novel structural fold that interacts with and mediates assembly of the HDAC1:MIDEAS complex. The carboxy-terminal domain of DNTTIP1 has a structure related to the SKI/SNO/DAC domain, despite lacking obvious sequence homology. We show that this domain in DNTTIP1 mediates interaction with both DNA and nucleosomes. Thus, DNTTIP1 acts as a dimeric chromatin binding module in the HDAC1:MIDEAS corepressor complex.


  • Organizational Affiliation
    • Henry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Lancaster Road, Leicester LE1 9HN, UK.

Macromolecule Content 

  • Total Structure Weight: 14.06 kDa 
  • Atom Count: 985 
  • Modeled Residue Count: 122 
  • Deposited Residue Count: 122 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Deoxynucleotidyltransferase terminal-interacting protein 1122Homo sapiensMutation(s): 0 
Gene Names: DNTTIP1C20orf167TDIF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H147 (Homo sapiens)
Explore Q9H147 
Go to UniProtKB:  Q9H147
PHAROS:  Q9H147
GTEx:  ENSG00000101457 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H147
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 65 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-02-18
    Type: Initial release
  • Version 1.1: 2015-03-18
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references