2MIQ | pdb_00002miq

Solution NMR Structure of PHD Type 1 Zinc Finger Domain 1 of Lysine-specific Demethylase Lid from Drosophila melanogaster, Northeast Structural Genomics Consortium (NESG) Target FR824J

PDB DOI: https://doi.org/10.2210/pdb2MIQ/pdb
BMRB: 19682

Classification: OXIDOREDUCTASE
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-12-17 Released: 2014-01-29
Deposition Author(s): Xu, X., Eletsky, A., Shastry, R., Maglaqui, M., Janjua, H., Xiao, R., Everett, J.K., Sukumaran, D.K., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG), Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2MIQ

This is version 1.4 of the entry. See complete history.

Literature

Solution NMR Structure of PHD Type 1 Zinc Finger Domain 1 from Lysine-specific Demethylase Lid from Drosophila melanogaster, Northeast Structural Genomics Consortium (NESG) Target FR824J

Xu, X., Eletsky, A., Shastry, R., Maglaqui, M., Janjua, H., Xiao, R., Everett, J.K., Sukumaran, D., Montelione, G.T., Szyperski, T.

To be published.

Macromolecule Content

Total Structure Weight: 10.23 kDa
Atom Count: 702
Modeled Residue Count: 94
Deposited Residue Count: 94
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysine-specific demethylase lid	A	94	Drosophila melanogaster	Mutation(s): 0 Gene Names: CG9088, lid EC: 1.14.11 (PDB Primary Data), 1.14.11.67 (UniProt)
UniProt
Find proteins for Q9VMJ7 (Drosophila melanogaster) Explore Q9VMJ7 Go to UniProtKB: Q9VMJ7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9VMJ7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-01-29

Deposition Author(s):

Sukumaran, D.K.

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)

Revision History (Full details and data files)

Version 1.0: 2014-01-29
Type: Initial release
Version 1.1: 2014-02-19
Changes: Structure summary
Version 1.2: 2014-04-23
Changes: Database references, Structure summary
Version 1.3: 2023-06-14
Changes: Data collection, Database references, Derived calculations, Other
Version 1.4: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.