2MHW | pdb_00002mhw

The solution NMR structure of maximin-4 in SDS micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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Literature

A kinked antimicrobial peptide from Bombina maxima. I. Three-dimensional structure determined by NMR in membrane-mimicking environments.

Toke, O.Banoczi, Z.Kiraly, P.Heinzmann, R.Burck, J.Ulrich, A.S.Hudecz, F.

(2011) Eur Biophys J 40: 447-462

  • DOI: https://doi.org/10.1007/s00249-010-0657-0
  • Primary Citation Related Structures: 
    2MHW

  • PubMed Abstract: 

    Maximin-4 is a 27-residue cationic antimicrobial peptide exhibiting selectivity for bacterial cells. As part of the innate defense system in the Chinese red-belly toad, its mode of action is thought to be ion channel or pore formation and dissipation of the electrochemical gradient across the pathogenic cell membrane. Here we present the high-resolution structure of maximin-4 in two different membrane mimetics, sodium dodecyl sulfate micelles and 50% methanol, as determined by (1)H solution NMR spectroscopy. In both environments, the peptide chain adopts a helix-break-helix conformation following a highly disordered N-terminal segment. Despite the similarities in the overall topology of the two structures, major differences are observed in terms of the interactions stabilizing the kink region and the arrangement of the four lysine residues. This has a marked influence on the shape and charge distribution of the molecule and may have implications for the bacterial selectivity of the peptide. The solution NMR results are complemented by CD spectroscopy and solid-state NMR experiments in lipid bilayers, both confirming the predominantly helical conformation of the peptide. As a first step in elucidating the membrane interactions of maximin-4, our study contributes to a better understanding of the mode of action of antimicrobial peptides and the factors governing their selectivity.


  • Organizational Affiliation
    • Institute of Structural Chemistry, Chemical Research Center of the Hungarian Academy of Sciences, 59-67 Pusztaszeri út, 1025 Budapest, Hungary. toke@chemres.hu

Macromolecule Content 

  • Total Structure Weight: 2.62 kDa 
  • Atom Count: 184 
  • Modeled Residue Count: 27 
  • Deposited Residue Count: 27 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Antimicrobial peptide27Bombina maximaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q58T52 (Bombina maxima)
Explore Q58T52 
Go to UniProtKB:  Q58T52
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ58T52
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-25
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Database references