2MGV | pdb_00002mgv

NMR structure of PASTA domain of PonA2 from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 150 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structural and binding properties of the PASTA domain of PonA2, a key penicillin binding protein from Mycobacterium tuberculosis.

Calvanese, L.Falcigno, L.Maglione, C.Marasco, D.Ruggiero, A.Squeglia, F.Berisio, R.D'Auria, G.

(2014) Biopolymers 101: 712-719

  • DOI: https://doi.org/10.1002/bip.22447
  • Primary Citation Related Structures: 
    2MGV

  • PubMed Abstract: 

    PonA2 is one of the two class A penicillin binding proteins of Mycobacterium tuberculosis, the etiologic agent of tuberculosis. It plays a complex role in mycobacterial physiology and is spotted as a promising target for inhibitors. PonA2 is involved in adaptation of M. tuberculosis to dormancy, an ability which has been attributed to the presence in its sequence of a C-terminal PASTA domain. Since PASTA modules are typically considered as β-lactam antibiotic binding domains, we determined the solution structure of the PASTA domain from PonA2 and analyzed its binding properties versus a plethora of potential binders, including the β-lactam antibiotics, two typical muropeptide mimics, and polymeric peptidoglycan. We show that, despite a high structural similarity with other PASTA domains, the PASTA domain of PonA2 displays different binding properties, as it is not able to bind muropeptides, or β-lactams, or polymeric peptidoglycan. These results indicate that the role of PASTA domains cannot be generalized, as their specific binding properties strongly depend on surface residues, which are widely variable.


  • Organizational Affiliation
    • CIRPeB, University of Naples Federico II, Naples, Italy.

Macromolecule Content 

  • Total Structure Weight: 6.58 kDa 
  • Atom Count: 461 
  • Modeled Residue Count: 65 
  • Deposited Residue Count: 65 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Bifunctional membrane-associated penicillin-binding protein 1A/1B ponA265Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: RVBD_3682
EC: 2.4.99.28 (UniProt), 3.4.16.4 (UniProt)
UniProt
Find proteins for I6YGX2 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore I6YGX2 
Go to UniProtKB:  I6YGX2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI6YGX2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 150 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-25
    Type: Initial release
  • Version 1.1: 2014-05-07
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references