2MC5 | pdb_00002mc5

A bacteriophage transcription regulator inhibits bacterial transcription initiation by -factor displacement


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 
  • Conformers Submitted: 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

A bacteriophage transcription regulator inhibits bacterial transcription initiation by sigma-factor displacement.

Liu, B.Shadrin, A.Sheppard, C.Mekler, V.Xu, Y.Severinov, K.Matthews, S.Wigneshweraraj, S.

(2014) Nucleic Acids Res 42: 4294-4305

  • DOI: https://doi.org/10.1093/nar/gku080
  • Primary Citation Related Structures: 
    2MC5, 2MC6

  • PubMed Abstract: 

    Bacteriophages (phages) appropriate essential processes of bacterial hosts to benefit their own development. The multisubunit bacterial RNA polymerase (RNAp) enzyme, which catalyses DNA transcription, is targeted by phage-encoded transcription regulators that selectively modulate its activity. Here, we describe the structural and mechanistic basis for the inhibition of bacterial RNAp by the transcription regulator P7 encoded by Xanthomonas oryzae phage Xp10. We reveal that P7 uses a two-step mechanism to simultaneously interact with the catalytic β and β' subunits of the bacterial RNAp and inhibits transcription initiation by inducing the displacement of the σ(70)-factor on initial engagement of RNAp with promoter DNA. The new mode of interaction with and inhibition mechanism of bacterial RNAp by P7 underscore the remarkable variety of mechanisms evolved by phages to interfere with host transcription.


  • Organizational Affiliation
    • MRC Centre for Molecular Microbiology and Infection, Imperial College London, London SW7 2AZ, UK, Waksman Institute for Microbiology and Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ USA and St. Petersburg State Polytechnical University, St. Petersburg, Russia.

Macromolecule Content 

  • Total Structure Weight: 8.19 kDa 
  • Atom Count: 577 
  • Modeled Residue Count: 73 
  • Deposited Residue Count: 73 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
45L73Xipdecavirus Xp10Mutation(s): 0 
UniProt
Find proteins for Q8LTJ5 (Xipdecavirus Xp10)
Explore Q8LTJ5 
Go to UniProtKB:  Q8LTJ5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8LTJ5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 
  • Conformers Submitted: 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-03-26
    Type: Initial release
  • Version 1.1: 2014-04-30
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references