2M5Q | pdb_00002m5q

Solution structure of lipidated glucagon analog in d-TFE

PDB DOI: https://doi.org/10.2210/pdb2M5Q/pdb
BMRB: 19071

Classification: LIPID BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): Yes

Deposited: 2013-03-04 Released: 2013-03-27
Deposition Author(s): Ward, B.P., Ma, D.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2M5Q

This is version 1.1 of the entry. See complete history.

Literature

Structural Changes Associated with Peptide Lipidation Broaden Biological Function

Ward, B.P., Ottaway, N.L., Ma, D., Gelfanov, V.M., Giedroc, D.P., Perez-Tilve, D.P., Tschop, M.H., Dimarchi, R.D.

To be published.

Macromolecule Content

Total Structure Weight: 4 kDa
Atom Count: 278
Modeled Residue Count: 30
Deposited Residue Count: 30
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucagon	A [auth X]	30	Homo sapiens	Mutation(s): 4
UniProt & NIH Common Fund Data Resources
Find proteins for P01275 (Homo sapiens) Explore P01275 Go to UniProtKB: P01275
PHAROS: P01275 GTEx: ENSG00000115263
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01275
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PLM Query on PLM Download:Ideal Coordinates CCD File SDF format, chain D [auth X] MOL2 format, chain D [auth X] mmCIF format, chain D [auth X]	D [auth X]	PALMITIC ACID C₁₆ H₃₂ O₂ IPCSVZSSVZVIGE-UHFFFAOYSA-N		Interactions Focus chain D [auth X]
GGL Query on GGL Download:Ideal Coordinates CCD File SDF format, chain B [auth X] SDF format, chain C [auth X] MOL2 format, chain B [auth X] MOL2 format, chain C [auth X] mmCIF format, chain B [auth X] mmCIF format, chain C [auth X]	B [auth X], C [auth X]	GAMMA-L-GLUTAMIC ACID C₅ H₉ N O₄ WHUUTDBJXJRKMK-VKHMYHEASA-N		Interactions Focus chain B [auth X] Focus chain C [auth X]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
AIB Query on AIB	A [auth X]	L-PEPTIDE LINKING	C₄ H₉ N O₂		ALA

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-03-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-03-27
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Derived calculations, Other

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.