2M33 | pdb_00002m33

Solution NMR structure of full-length oxidized microsomal rabbit cytochrome b5

PDB DOI: https://doi.org/10.2210/pdb2M33/pdb
BMRB: 18919

Classification: ELECTRON TRANSPORT
Organism(s): Oryctolagus cuniculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-01-08 Released: 2013-02-06
Deposition Author(s): Subramanian, V., Ahuja, S., Popovych, N., Huang, R., Le Clair, S.V., Jahr, N., Soong, R., Xu, J., Yamamoto, K., Nanga, R.P., Im, S., Waskell, L., Ramamoorthy, A.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 23
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2M33

This is version 1.3 of the entry. See complete history.

Literature

NMR structure of full-length mammalian cytochrome b5

Ahuja, S., Subramanian, V., Popovych, N., Huang, R., Le Clair, S.V., Jahr, N., Soong, R., Xu, J., Yamamoto, K., Nanga, R.P., Im, S., Waskell, L., Ramamoorthy, A.

To be published.

Macromolecule Content

Total Structure Weight: 15.99 kDa
Atom Count: 879
Modeled Residue Count: 104
Deposited Residue Count: 134
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b5	A	134	Oryctolagus cuniculus	Mutation(s): 0 Gene Names: CYB5A, CYB5
UniProt
Find proteins for P00169 (Oryctolagus cuniculus) Explore P00169 Go to UniProtKB: P00169
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00169
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM Query on HEM Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 23
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-02-06

Deposition Author(s):

Subramanian, V.

Ramamoorthy, A.

Revision History (Full details and data files)

Version 1.0: 2013-02-06
Type: Initial release
Version 1.1: 2016-04-27
Changes: Structure summary
Version 1.2: 2023-06-14
Changes: Data collection, Database references, Derived calculations, Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.