2LUT | pdb_00002lut

NMR solution structure of midkine-a

• PDB DOI: https://doi.org/10.2210/pdb2LUT/pdb
• BMRB: 18540

• Classification: HORMONE
• Organism(s): Danio rerio
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-06-21 Released: 2013-05-01 
• Deposition Author(s): Lim, J., Yang, D., Meng, D.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Literature

Structural and Functional Characterization of Two Zebrafish Midkine Proteins Reveals Importance of the Conserved Hinge for Heparin Binding and Embryogenesis

Lim, J., Yao, S., Meng, D., Winkler, C., Yang, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 13.55 kDa 
• Atom Count: 940 
• Modeled Residue Count: 125 
• Deposited Residue Count: 125 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Midkine-related growth factor	A	125	Danio rerio	Mutation(s): 0  Gene Names: mdka, mdk1, plei1
UniProt
Find proteins for Q9W767 (Danio rerio) Explore Q9W767  Go to UniProtKB:  Q9W767

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-05-01 
Deposition Author(s): Lim, J., Yang, D., Meng, D.

Revision History  

• Version 1.0: 2013-05-01
  Type: Initial release
  
• Version 1.1: 2024-10-09
  Changes: Data collection, Database references, Structure summary