2L4F | pdb_00002l4f

NMR structure of the UBA domain of S. cerevisiae Dcn1 bound to ubiquitin

PDB DOI: https://doi.org/10.2210/pdb2L4F/pdb
BMRB: 17239

Classification: PROTEIN BINDING
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-10-05 Released: 2011-10-05
Deposition Author(s): Burschowsky, D., Mattle, D., Rudolf, F., Peter, M., Wider, G.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 40
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2L4F

This is version 1.3 of the entry. See complete history.

Literature

Structural analysis of the ubiquitin-associated domain (UBA) of yeast Dcn1 in complex with ubiquitin

Burschowsky, D., Rudolf, F., Mattle, D., Peter, M., Wider, G.

To be published.

Macromolecule Content

Total Structure Weight: 6.92 kDa
Atom Count: 477
Modeled Residue Count: 57
Deposited Residue Count: 59
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Defective in cullin neddylation protein 1	A	59	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: DCN1, DCN1 YLR128W, L3111, YLR128W
UniProt
Find proteins for Q12395 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12395 Go to UniProtKB: Q12395
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q12395
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 40
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-10-05

Deposition Author(s):

Burschowsky, D.

Revision History (Full details and data files)

Version 1.0: 2011-10-05
Type: Initial release
Version 1.1: 2020-02-05
Changes: Data collection, Database references, Other
Version 1.2: 2023-06-14
Changes: Database references, Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.