2KYB | pdb_00002kyb

Solution structure of CpR82G from Clostridium perfringens. North East Structural Genomics Consortium Target CpR82g

PDB DOI: https://doi.org/10.2210/pdb2KYB/pdb
BMRB: 16944

Classification: TOXIN
Organism(s): Clostridium perfringens ATCC 13124
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-05-21 Released: 2010-06-09
Deposition Author(s): Mobley, C.K., Lee, H., Lee, D., Ciccosanti, C., Janjua, H., Acton, T.B., Xiao, R., Everrett, J.K., Montelione, G.T., Prestegard, J.H., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2KYB

This is version 1.3 of the entry. See complete history.

Literature

Solution Structure of CpR82G

Mobley, C.K., Lee, H., Montelione, G.T., Prestegard, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 6.34 kDa
Atom Count: 445
Modeled Residue Count: 60
Deposited Residue Count: 60
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain protein, possible enterotoxin	A	60	Clostridium perfringens ATCC 13124	Mutation(s): 0 Gene Names: entD, CPF_1439
UniProt
Find proteins for A0A0H2YV13 (Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)) Explore A0A0H2YV13 Go to UniProtKB: A0A0H2YV13
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H2YV13
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-06-09

Deposition Author(s):

Montelione, G.T.

Prestegard, J.H.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2010-06-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2020-02-05
Changes: Data collection, Database references, Derived calculations, Experimental preparation, Other
Version 1.3: 2024-05-01
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.