2KQ9 | pdb_00002kq9

Solution structure of DnaK suppressor protein from Agrobacterium tumefaciens C58. Northeast Structural Genomics Consortium target AtT12/Ontario Center for Structural Proteomics Target atc0888

PDB DOI: https://doi.org/10.2210/pdb2KQ9/pdb
BMRB: 16594

Classification: TRANSCRIPTION
Organism(s): Agrobacterium fabrum str. C58
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2009-11-02 Released: 2009-11-17
Deposition Author(s): Wu, B., Yee, A., Fares, C., Lemak, A., Semest, A., Montelione, G.T., Arrowsmith, C., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2KQ9

This is version 1.6 of the entry. See complete history.

Literature

Solution Structure of DnaK protein from Agrobacterium tumefaciens C58. Northeast Structural Genomics Consortium target AtT12/Ontario Center for Structural Proteomics Target atc0888

Wu, B., Yee, A., Fares, C., Lemak, A., Semest, A., Montelione, G.T., Arrowsmith, C.

To be published.

Macromolecule Content

Total Structure Weight: 12.7 kDa
Atom Count: 884
Modeled Residue Count: 112
Deposited Residue Count: 112
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DnaK suppressor protein	A	112	Agrobacterium fabrum str. C58	Mutation(s): 1 Gene Names: dskA, Atu0905
UniProt
Find proteins for Q8UGY0 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q8UGY0 Go to UniProtKB: Q8UGY0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8UGY0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-11-17

Deposition Author(s):

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Ontario Centre for Structural Proteomics (OCSP)

Revision History (Full details and data files)

Version 1.0: 2009-11-17
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-01-18
Changes: Database references
Version 1.3: 2020-02-26
Changes: Data collection, Database references, Other
Version 1.4: 2021-10-13
Changes: Database references, Derived calculations
Version 1.5: 2023-06-14
Changes: Other
Version 1.6: 2024-05-08
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.