2KKC | pdb_00002kkc

NMR structure of the p62 PB1 domain

PDB DOI: https://doi.org/10.2210/pdb2KKC/pdb
BMRB: 16361

Classification: SIGNALING PROTEIN, TRANSPORT PROTEIN
Organism(s): Rattus norvegicus
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2009-06-18 Released: 2009-09-15
Deposition Author(s): Yokochi, M., Inagaki, F.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2KKC

This is version 1.3 of the entry. See complete history.

Literature

The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway

Saio, T., Yokochi, M., Inagaki, F.

(2009) J Biomol NMR 45: 335-341

PubMed: 19728111 Search on PubMed
DOI: https://doi.org/10.1007/s10858-009-9370-7
Primary Citation Related Structures:
2KKC

Organizational Affiliation

Graduate School of Life Science, Hokkaido University, Sapporo 001-0021, Japan.

Macromolecule Content

Total Structure Weight: 11.43 kDa
Atom Count: 791
Modeled Residue Count: 100
Deposited Residue Count: 102
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sequestosome-1	A	102	Rattus norvegicus	Mutation(s): 2
UniProt
Find proteins for O08623 (Rattus norvegicus) Explore O08623 Go to UniProtKB: O08623
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O08623
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-09-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2009-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-11-10
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.